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FreeBSD Ports
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path:
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/
biology
Commit message (
Expand
)
Author
Age
*
biology/subread: Update to 2.0.2
jwb
2021-03-30
*
biology/molden: Fix build with gfortran10
yuri
2021-03-29
*
biology/igv: Update 2.8.13 -> 2.9.4
yuri
2021-03-28
*
biology/vcflib: fix build on powerpc64le
pkubaj
2021-03-28
*
biology/vsearch: Update to 2.16.0
jwb
2021-03-24
*
Mark ports recursively depending on Python 2.7 for expiration on June 23.
rene
2021-03-24
*
biology/vcf2hap: Generate .hap file from VCF for haplohseq
jwb
2021-03-23
*
biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF file
jwb
2021-03-23
*
- Update Unipro UGENE to version 38.0
danfe
2021-03-23
*
Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,
danfe
2021-03-22
*
biology/vcf-split: Split a multi-sample VCF into single-sample VCFs
jwb
2021-03-21
*
biology/biolibc: Low-level high-performance bioinformatics library
jwb
2021-03-21
*
biology/htslib: Update to 1.12
jwb
2021-03-20
*
biology/generand: Update to 0.1.2
jwb
2021-03-20
*
biology/py-multiqc: Update to 1.10
jwb
2021-03-20
*
biology/ngs-sdk: Update 2.10.9 -> 2.11.0
yuri
2021-03-20
*
PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1
lbartoletti
2021-03-16
*
biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format
jwb
2021-03-15
*
biology/abyss: Add PORTSCOUT line
yuri
2021-03-14
*
Move: biology/py-fastTSNE -> math/py-openTSNE
yuri
2021-03-13
*
biology/gatk: Fix fetch
yuri
2021-03-13
*
biology/gatk: Update 4.1.9.0 -> 4.2.0.0
yuri
2021-03-12
*
biology/diamond: Update to 2.0.8
jrm
2021-03-11
*
biology/hmmer: disable on powerpc64le and powerpcspe
pkubaj
2021-03-10
*
biology/py-scikit-bio: fix build on powerpc64
pkubaj
2021-03-09
*
biology/py-scikit-bio: fix build on powerpc64le
pkubaj
2021-03-09
*
PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0
lbartoletti
2021-03-08
*
Unbreak INDEX
antoine
2021-03-06
*
py-cutadapt: Update to 3.3
jwb
2021-03-06
*
biology/libbigwig: Update 0.4.4 -> 0.4.6
yuri
2021-03-06
*
biology/spoa: fix build on non-x86
pkubaj
2021-03-04
*
biology/bwa: fix build on powerpc64le
pkubaj
2021-03-02
*
biology/py-bx-python: Update 0.8.9 -> 0.8.10
yuri
2021-02-27
*
biology/hyphy: Update to 2.5.29
jrm
2021-02-25
*
biology/hyphy: Update to 2.5.28
jrm
2021-02-23
*
Introduce devel/onetbb and mark devel/tbb as legacy
martymac
2021-02-19
*
biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDS
yuri
2021-02-19
*
Mark BROKEN in 13/14 (via latest llvm update).
linimon
2021-02-17
*
biology/diamond: Update to 2.0.7
jrm
2021-02-17
*
Update a few GNUstep ports:
nc
2021-02-14
*
biology/py-multiqc: Update to 1.9
jwb
2021-02-05
*
biology/fastqc: Update to 0.11.9
jwb
2021-02-04
*
biology/bioparser: Update 3.0.12 -> 3.0.12-2
yuri
2021-02-03
*
biology/py-cutadapt: Update to 3.2
jwb
2021-02-02
*
biology/bowtie2: Reverse switch to devel/onetbb
jwb
2021-01-30
*
biology/bowtie2: Switch to devel/onetbb
jwb
2021-01-30
*
biology/vsearch: Update to 2.15.2
jwb
2021-01-30
*
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
sunpoet
2021-01-30
*
biology/hyphy: Update to version 2.5.27
jrm
2021-01-27
*
biology/kallisto: Add -lz for pending hdf5 upgrade
jwb
2021-01-26
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